LeadField

Module: devtests.bidomain.leadfield.run

Section author: Gernot Plank <gernot.plank@medunigraz.at>,Anton Prassl <anton.prassl@medunigraz.at>

This is a simple example to demonstrate the leadfield approach.

Problem Setup

../../_images/LeadField_Setup.png

Usage

As with other examples, add the --visualize option to automatically load the results in meshalyzer:

./run.py --tend 20 --sourceModel bidomain --visualize

Tests

serial_bd_RD_petsc

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:13:47.412292, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:12:52.598216
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:26:40.094963, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:03:46.764562
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RD_pt

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:30:26.949319, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:07:53.978956
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:38:21.019401, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:02:18.768906
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:40:39.873667, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:01:11.316659
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:41:51.271996, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:59.388172
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:42:50.748568, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:48.151539
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

serial_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:43:38.987550, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:33.568726
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_md_RD_petsc

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:44:12.648379, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:37.287200
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:44:49.967353, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:25.637166
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RD_pt

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:45:15.639151, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:31.115885
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

serial_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:45:46.789300, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:17.177876
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_bd_RD_petsc

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:46:04.001052, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:03:31.183898
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:49:35.270126, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:01:04.943505
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RD_pt

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:50:40.290871, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:02:41.183872
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

parallel_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:53:21.554224, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:47.517285
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000114084e-07

parallel_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:54:09.154150, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:23.209448
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:54:32.439702, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:19.174247
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:54:51.697447, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:15.546031
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06

parallel_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-12-06 00:55:07.322210, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:11.572420
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

parallel_md_RD_petsc

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:55:18.982519, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:14.268202
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 7.543743190882579e-15

parallel_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:55:33.281579, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:09.837061
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_md_RD_pt

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:55:43.152832, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:11.291293
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

parallel_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-12-06 00:55:54.471904, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}

Runtime: 0:00:07.204273
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09