LeadField

Module: devtests.bidomain.leadfield.run

Section author: Gernot Plank <gernot.plank@medunigraz.at>,Anton Prassl <anton.prassl@medunigraz.at>

This is a simple example to demonstrate the leadfield approach.

Problem Setup

../../_images/LeadField_Setup.png

Usage

As with other examples, add the --visualize option to automatically load the results in meshalyzer:

./run.py --tend 20 --sourceModel bidomain --visualize

Tests

serial_bd_RD_petsc

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:13:53.460207, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:13:23.786760
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:27:17.329327, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:03:50.376662
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RD_pt

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:31:07.797377, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:08:18.874357
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:39:26.756038, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:02:19.522554
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:41:46.366386, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:01:11.209600
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:42:57.669210, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:59.609749
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:43:57.363460, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:47.623868
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

serial_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:44:45.073552, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:33.414556
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_md_RD_petsc

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:45:18.576540, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:37.334367
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:45:55.942375, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:25.812285
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RD_pt

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:46:21.788224, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:31.160141
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

serial_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:46:52.980108, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:17.167464
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_bd_RD_petsc

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:47:10.182677, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:03:29.805677
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:50:40.071331, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:01:05.356692
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RD_pt

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:51:45.503395, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:02:40.115898
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

parallel_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:54:25.693047, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:47.169433
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000114084e-07

parallel_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:55:12.947652, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:23.198585
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:55:36.233177, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:19.063886
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:55:55.380317, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:15.367271
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06

parallel_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2023-04-02 00:56:10.826631, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:11.440086
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

parallel_md_RD_petsc

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:56:22.345217, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:13.882617
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 7.543743190882579e-15

parallel_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:56:36.259026, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:09.749689
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_md_RD_pt

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:56:46.043922, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:11.133799
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

parallel_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2023-04-02 00:56:57.212122, revision {‘base’: ‘d522ff15’}, dependency revisions {PT_C: 31642c1e,cvsys: 1d1b5a1c,eikonal: b58be0de,elasticity: a9cc0f2b}

Runtime: 0:00:06.952124
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09