carputils.model.ionic

Functions

get(*args, **kwargs) Get a class from its key string from keys()
keys() Return a list of string keys to be used with get()
summary([indent, ncolumns, padding]) Return a string summarizing the models and their parameters

Classes

AlievPanfilovIonicModel(*args, **kwargs) Describes the AlievPanfilov ionic model
AslanidiSleimanIonicModel(*args, **kwargs) Describes the AslanidiSleiman ionic model
AugustinIonicModel(*args, **kwargs) Describes the Augustin ionic model
BondarenkoIonicModel(*args, **kwargs) Describes the Bondarenko ionic model
CamposIonicModel(*args, **kwargs) Describes the Campos ionic model
CourtemancheIonicModel(*args, **kwargs) Describes the Courtemanche ionic model
DiFrancescoNobleIonicModel(*args, **kwargs) Describes the DiFrancescoNoble ionic model
DrouhardRobergeIonicModel(*args, **kwargs) Describes the DrouhardRoberge ionic model
FoxIonicModel(*args, **kwargs) Describes the Fox ionic model
GrandiIonicModel(*args, **kwargs) Describes the Grandi ionic model
GrandiPanditVoigtIonicModel(*args, **kwargs) Describes the GrandiPanditVoigt ionic model
HodgkinHuxleyIonicModel(*args, **kwargs) Describes the HodgkinHuxley ionic model
InadaIonicModel(*args, **kwargs) Describes the Inada ionic model
IribeKohlIonicModel(*args, **kwargs) Describes the IribeKohl ionic model
KurataIonicModel(*args, **kwargs) Describes the Kurata ionic model
LoeweIonicModel(*args, **kwargs) Describes the Loewe ionic model
LuoRudy91IonicModel(*args, **kwargs) Describes the LuoRudy91 ionic model
LuoRudy94IonicModel(*args, **kwargs) Describes the LuoRudy94 ionic model
MacCannellIonicModel(*args, **kwargs) Describes the MacCannell ionic model
MahajanShiferawIonicModel(*args, **kwargs) Describes the MahajanShiferaw ionic model
MaleckarIonicModel(*args, **kwargs) Describes the Maleckar ionic model
MitchellSchaefferIonicModel(*args, **kwargs) Describes the MitchellSchaeffer ionic model
NygrenIonicModel(*args, **kwargs) Describes the Nygren ionic model
OHaraIonicModel(*args, **kwargs) Describes the OHara ionic model
PassiveIonicRegion(*args, **kwargs) Describes the passive ionic model configuration
PathmanathanIonicModel(*args, **kwargs) Describes the Pathmanathan ionic model
PlonseyIonicModel(*args, **kwargs) Describes the Plonsey ionic model
RamirezIonicModel(*args, **kwargs) Describes the Ramirez ionic model
ShannonIonicModel(*args, **kwargs) Describes the Shannon ionic model
SkibsbyeIonicModel(*args, **kwargs) Describes the Skibsbye ionic model
StewardIonicModel(*args, **kwargs) Describes the Steward ionic model
TomekIonicModel(*args, **kwargs) Describes the Tomek ionic model
WangSobieIonicModel(*args, **kwargs) Describes the WangSobie ionic model
tenTusscherPanfilovIonicModel(*args, **kwargs) Describes the tenTusscherPanfilov ionic model
class carputils.model.ionic.AlievPanfilovIonicModel(*args, **kwargs)

Describes the AlievPanfilov ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
mu1 : float, optional
Value of mu1, defaults to 0.2
mu2 : float, optional
Value of mu2, defaults to 0.3
class carputils.model.ionic.AslanidiSleimanIonicModel(*args, **kwargs)

Describes the AslanidiSleiman ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Ca_handling : float, optional
Value of Ca_handling, defaults to 1.0
Cae : float, optional
Value of Cae, defaults to 1.8
Cle : float, optional
Value of Cle, defaults to 150.0
Cli : float, optional
Value of Cli, defaults to 30.0
GCaB : float, optional
Value of GCaB, defaults to 0.00035182
GCaL : float, optional
Value of GCaL, defaults to 0.27
GCaT : float, optional
Value of GCaT, defaults to 0.2
GCl : float, optional
Value of GCl, defaults to 0.3
GClB : float, optional
Value of GClB, defaults to 0.0009
GK1 : float, optional
Value of GK1, defaults to 0.5
GKB : float, optional
Value of GKB, defaults to 5e-05
GKr : float, optional
Value of GKr, defaults to 0.015583333333333
GKs : float, optional
Value of GKs, defaults to 0.011738183745949
GNa : float, optional
Value of GNa, defaults to 20.0
GNaB : float, optional
Value of GNaB, defaults to 2.97e-05
GNaL : float, optional
Value of GNaL, defaults to 0.0162
Gto : float, optional
Value of Gto, defaults to 0.112
ICaPHill : float, optional
Value of ICaPHill, defaults to 1.6
ICaPKmf : float, optional
Value of ICaPKmf, defaults to 0.5
ICaPVmf : float, optional
Value of ICaPVmf
INaCamax : float, optional
Value of INaCamax, defaults to 4.5
Ke_init : float, optional
Value of Ke_init, defaults to 5.4
Ki : float, optional
Value of Ki, defaults to 135.0
kmcaact : float, optional
Value of kmcaact, defaults to 0.000125
kmcai : float, optional
Value of kmcai, defaults to 0.0036
kmcao : float, optional
Value of kmcao, defaults to 1.3
kmnai1 : float, optional
Value of kmnai1, defaults to 12.3
kmnao : float, optional
Value of kmnao, defaults to 87.5
ksat : float, optional
Value of ksat, defaults to 0.27
Mgi : float, optional
Value of Mgi, defaults to 1.0
Nae : float, optional
Value of Nae, defaults to 140.0
Nai : float, optional
Value of Nai, defaults to 8.8
nu : float, optional
Value of nu, defaults to 0.35
PNaK : float, optional
Value of PNaK, defaults to 0.01833
T : float, optional
Value of T, defaults to 310.0
class carputils.model.ionic.AugustinIonicModel(*args, **kwargs)

Describes the Augustin ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
a : float, optional
Value of a, defaults to 0.35
A_1 : float, optional
Value of A_1, defaults to -29.0
A_2 : float, optional
Value of A_2, defaults to 116.0
alpha_1 : float, optional
Value of alpha_1, defaults to 0.1
alpha_2 : float, optional
Value of alpha_2, defaults to 0.5
beta_0 : float, optional
Value of beta_0, defaults to 1.65
beta_1 : float, optional
Value of beta_1, defaults to -1.5
Ca_50ref : float, optional
Value of Ca_50ref, defaults to 0.52
Cai_init : float, optional
Value of Cai_init, defaults to 0.08597401
Cao : float, optional
Value of Cao, defaults to 1.8
cell_type : float, optional
Value of cell_type
Cli : float, optional
Value of Cli, defaults to 15.0
Clo : float, optional
Value of Clo, defaults to 150.0
flags : float, optional
Value of flags
k_TRPN : float, optional
Value of k_TRPN, defaults to 0.14
k_xb : float, optional
Value of k_xb, defaults to 0.0049
Ki_init : float, optional
Value of Ki_init, defaults to 120.0
Ko : float, optional
Value of Ko, defaults to 5.4
lengthDep : float, optional
Value of lengthDep, defaults to 0.0
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
Mgi : float, optional
Value of Mgi, defaults to 1.0
n_TRPN : float, optional
Value of n_TRPN, defaults to 1.54
n_xb : float, optional
Value of n_xb, defaults to 3.38
Nai_init : float, optional
Value of Nai_init, defaults to 9.06
Nao : float, optional
Value of Nao, defaults to 140.0
T_ref : float, optional
Value of T_ref, defaults to 117.1
TRPN_50 : float, optional
Value of TRPN_50, defaults to 0.37
class carputils.model.ionic.BondarenkoIonicModel(*args, **kwargs)

Describes the Bondarenko ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
a : float, optional
Value of a, defaults to 0.0625
Acap : float, optional
Value of Acap, defaults to 0.00013866
aKss_init : float, optional
Value of aKss_init, defaults to 0.287585636847048
ato_f_init : float, optional
Value of ato_f_init, defaults to 0.0142335908879204
ato_s_init : float, optional
Value of ato_s_init, defaults to 0.0443263407760382
aur_init : float, optional
Value of aur_init, defaults to 0.00346258606821817
b : float, optional
Value of b, defaults to 0.4
Beta_Na4 : float, optional
Value of Beta_Na4
Beta_Na5 : float, optional
Value of Beta_Na5
Bmax : float, optional
Value of Bmax, defaults to 109.0
C_K1_init : float, optional
Value of C_K1_init, defaults to 0.0011733433957123
C_K2_init : float, optional
Value of C_K2_init, defaults to 0.00105586824723736
C_Na1_init : float, optional
Value of C_Na1_init, defaults to 0.000420472760277688
C_Na2_init : float, optional
Value of C_Na2_init, defaults to 0.0240114508843199
Cai_init : float, optional
Value of Cai_init, defaults to 0.0949915068139801
CaJSR_init : float, optional
Value of CaJSR_init, defaults to 171.167969039613
CaMKt_init : float, optional
Value of CaMKt_init, defaults to 0.729027738385079
CaNSR_init : float, optional
Value of CaNSR_init, defaults to 404.825013216286
Cao : float, optional
Value of Cao, defaults to 1400.0
Cass_init : float, optional
Value of Cass_init, defaults to 0.0954184301907784
Cm : float, optional
Value of Cm, defaults to 1.0
const5 : float, optional
Value of const5, defaults to 8.2
CSQN_tot : float, optional
Value of CSQN_tot, defaults to 50000.0
delta_V_L : float, optional
Value of delta_V_L, defaults to 6.4489
E_Cl : float, optional
Value of E_Cl, defaults to -40.0
eta : float, optional
Value of eta, defaults to 0.35
F : float, optional
Value of F, defaults to 96.5
GbCa : float, optional
Value of GbCa, defaults to 0.0007
GClCa : float, optional
Value of GClCa, defaults to 10.0
GK1 : float, optional
Value of GK1, defaults to 0.35
GKr : float, optional
Value of GKr, defaults to 0.0165
GKs : float, optional
Value of GKs, defaults to 0.00575
GKss : float, optional
Value of GKss, defaults to 0.0595
GKto_f : float, optional
Value of GKto_f, defaults to 0.5347
GKto_s : float, optional
Value of GKto_s, defaults to 0.0
GKur : float, optional
Value of GKur, defaults to 0.25
GNa : float, optional
Value of GNa, defaults to 16.0
GNab : float, optional
Value of GNab, defaults to 0.0026
I1_Na_init : float, optional
Value of I1_Na_init, defaults to 0.000517471697712382
I2_Na_init : float, optional
Value of I2_Na_init, defaults to 2.45406116958509e-05
I_init : float, optional
Value of I_init, defaults to 0.427651445872853
I_K_init : float, optional
Value of I_K_init, defaults to 0.00140618453684944
IC_Na2_init : float, optional
Value of IC_Na2_init, defaults to 0.0174528857380179
IC_Na3_init : float, optional
Value of IC_Na3_init, defaults to 0.402980726914811
ICaLmax : float, optional
Value of ICaLmax, defaults to 7.0
IF_Na_init : float, optional
Value of IF_Na_init, defaults to 0.000306123648969581
IpCa_max : float, optional
Value of IpCa_max, defaults to 0.0955
ito_f_init : float, optional
Value of ito_f_init, defaults to 0.996989882138174
ito_s_init : float, optional
Value of ito_s_init, defaults to 0.887568880831388
iur_init : float, optional
Value of iur_init, defaults to 0.955684946168062
K_L : float, optional
Value of K_L, defaults to 0.3
K_mAllo : float, optional
Value of K_mAllo, defaults to 0.0
K_mCai : float, optional
Value of K_mCai, defaults to 3.6
K_mCao : float, optional
Value of K_mCao, defaults to 1400.0
k_minus_a : float, optional
Value of k_minus_a, defaults to 0.07125
k_minus_b : float, optional
Value of k_minus_b, defaults to 0.965
k_minus_c : float, optional
Value of k_minus_c, defaults to 0.0008
K_mNai : float, optional
Value of K_mNai, defaults to 12000.0
K_mNao : float, optional
Value of K_mNao, defaults to 88000.0
k_plus_a : float, optional
Value of k_plus_a, defaults to 0.006075
k_plus_b : float, optional
Value of k_plus_b, defaults to 0.00405
k_plus_c : float, optional
Value of k_plus_c, defaults to 0.009
k_sat : float, optional
Value of k_sat, defaults to 0.27
kb : float, optional
Value of kb, defaults to 0.036778
Kd : float, optional
Value of Kd, defaults to 0.6
kf : float, optional
Value of kf, defaults to 0.023761
Ki_init : float, optional
Value of Ki_init, defaults to 115599.50642567
Km_Cl : float, optional
Value of Km_Cl, defaults to 10.0
Km_CSQN : float, optional
Value of Km_CSQN, defaults to 630.0
Km_Ko : float, optional
Value of Km_Ko, defaults to 1500.0
Km_Nai : float, optional
Value of Km_Nai, defaults to 16600.0
Km_pCa : float, optional
Value of Km_pCa, defaults to 0.2885
Km_up : float, optional
Value of Km_up, defaults to 0.412
Ko : float, optional
Value of Ko, defaults to 5400.0
m : float, optional
Value of m, defaults to 3.0
maxINaK : float, optional
Value of maxINaK, defaults to 2.486
n : float, optional
Value of n, defaults to 4.0
Nai_init : float, optional
Value of Nai_init, defaults to 12364.7482121793
Nao : float, optional
Value of Nao, defaults to 134000.0
nKs_init : float, optional
Value of nKs_init, defaults to 0.00336735013094628
O_init : float, optional
Value of O_init, defaults to 1.23713515513533e-06
O_K_init : float, optional
Value of O_K_init, defaults to 0.0131742086125972
O_Na_init : float, optional
Value of O_Na_init, defaults to 1.46826771436314e-06
off_rate : float, optional
Value of off_rate, defaults to 0.0002
on_rate : float, optional
Value of on_rate, defaults to 0.05
P_C2_init : float, optional
Value of P_C2_init, defaults to 0.565182571165673
P_CaL : float, optional
Value of P_CaL, defaults to 2.5
P_O1_init : float, optional
Value of P_O1_init, defaults to 0.00571393383393735
P_O2_init : float, optional
Value of P_O2_init, defaults to 2.09864618235341e-08
P_ryr_const1 : float, optional
Value of P_ryr_const1, defaults to -0.01
P_ryr_const2 : float, optional
Value of P_ryr_const2, defaults to -2.0
P_RyR_init : float, optional
Value of P_RyR_init, defaults to 0.000280539508743811
phi_L : float, optional
Value of phi_L, defaults to 1.798
R : float, optional
Value of R, defaults to 8.314
T : float, optional
Value of T, defaults to 308.0
t_L : float, optional
Value of t_L, defaults to 1.5
tau_i_const : float, optional
Value of tau_i_const, defaults to 643.0
tau_L : float, optional
Value of tau_L, defaults to 1150.0
tau_tr : float, optional
Value of tau_tr, defaults to 20.0
tau_xfer : float, optional
Value of tau_xfer, defaults to 8.0
v1 : float, optional
Value of v1, defaults to 4.5
v1_caff : float, optional
Value of v1_caff, defaults to 10.0
v2 : float, optional
Value of v2, defaults to 3e-05
v2_caff : float, optional
Value of v2_caff, defaults to 0.1
V_init : float, optional
Value of V_init, defaults to -78.9452115785979
V_L : float, optional
Value of V_L, defaults to 0.0
V_max_NCX : float, optional
Value of V_max_NCX, defaults to 3.939
VJSR : float, optional
Value of VJSR, defaults to 7.7e-08
vmup_init : float, optional
Value of vmup_init, defaults to 0.5059
Vmyo : float, optional
Value of Vmyo, defaults to 2.2e-05
VNSR : float, optional
Value of VNSR, defaults to 2.31e-07
Vss : float, optional
Value of Vss, defaults to 2.2e-08
y_gate_init : float, optional
Value of y_gate_init, defaults to 0.845044436980163
y_gate_tau_const1 : float, optional
Value of y_gate_tau_const1, defaults to 8.0
y_gate_tau_const2 : float, optional
Value of y_gate_tau_const2, defaults to 315.0
class carputils.model.ionic.CamposIonicModel(*args, **kwargs)

Describes the Campos ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 1.8
CSR : float, optional
Value of CSR, defaults to 1200.0
g_Ca : float, optional
Value of g_Ca, defaults to 0.6
g_K1 : float, optional
Value of g_K1, defaults to 0.3
g_Kr : float, optional
Value of g_Kr, defaults to 0.003
g_Ks : float, optional
Value of g_Ks, defaults to 0.043
g_Na : float, optional
Value of g_Na, defaults to 12.0
g_RyR : float, optional
Value of g_RyR, defaults to 2.25
g_sp : float, optional
Value of g_sp
g_tof : float, optional
Value of g_tof, defaults to 0.1
g_tos : float, optional
Value of g_tos, defaults to 0.04
INaCamax : float, optional
Value of INaCamax, defaults to 0.3
INaKmax : float, optional
Value of INaKmax, defaults to 1.5
Ko : float, optional
Value of Ko, defaults to 5.4
Nao : float, optional
Value of Nao, defaults to 136.0
v_Na : float, optional
Value of v_Na, defaults to 0.0
v_up : float, optional
Value of v_up, defaults to 0.3
class carputils.model.ionic.CourtemancheIonicModel(*args, **kwargs)

Describes the Courtemanche ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 1e-06
Cao : float, optional
Value of Cao, defaults to 1.8
Cm : float, optional
Value of Cm, defaults to 100.0
factorGKur : float, optional
Value of factorGKur, defaults to 1.0
factorGrel : float, optional
Value of factorGrel, defaults to 1.0
factorGtr : float, optional
Value of factorGtr, defaults to 1.0
factorGup : float, optional
Value of factorGup, defaults to 1.0
factorhGate : float, optional
Value of factorhGate, defaults to 0.0
factormGate : float, optional
Value of factormGate, defaults to 0.0
factoroaGate : float, optional
Value of factoroaGate, defaults to 0.0
factorxrGate : float, optional
Value of factorxrGate, defaults to 1.0
GACh : float, optional
Value of GACh, defaults to 0.0
GbCa : float, optional
Value of GbCa, defaults to 0.00113
GbNa : float, optional
Value of GbNa, defaults to 0.000674
GCaL : float, optional
Value of GCaL, defaults to 0.1238
GK1 : float, optional
Value of GK1, defaults to 0.09
GKr : float, optional
Value of GKr, defaults to 0.0294
GKs : float, optional
Value of GKs, defaults to 0.129
GNa : float, optional
Value of GNa, defaults to 7.8
Gto : float, optional
Value of Gto, defaults to 0.1652
Ko : float, optional
Value of Ko, defaults to 5.4
maxCaup : float, optional
Value of maxCaup, defaults to 15.0
maxINaCa : float, optional
Value of maxINaCa, defaults to 1600.0
maxINaK : float, optional
Value of maxINaK, defaults to 0.6
maxIpCa : float, optional
Value of maxIpCa, defaults to 0.275
maxIup : float, optional
Value of maxIup, defaults to 0.005
Nao : float, optional
Value of Nao, defaults to 140.0
class carputils.model.ionic.DiFrancescoNobleIonicModel(*args, **kwargs)

Describes the DiFrancescoNoble ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cm : float, optional
Value of Cm, defaults to 12.0
factorIfunny : float, optional
Value of factorIfunny, defaults to 1.0
GCaf : float, optional
Value of GCaf, defaults to 1.0
GNa : float, optional
Value of GNa, defaults to 750.0
Gto : float, optional
Value of Gto, defaults to 1.0
kNaCa : float, optional
Value of kNaCa, defaults to 0.02
class carputils.model.ionic.DrouhardRobergeIonicModel(*args, **kwargs)

Describes the DrouhardRoberge ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
APDshorten : float, optional
Value of APDshorten, defaults to 1.0
GNa : float, optional
Value of GNa, defaults to 15.0
Gsi : float, optional
Value of Gsi, defaults to 0.09
class carputils.model.ionic.FoxIonicModel(*args, **kwargs)

Describes the Fox ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
GKr : float, optional
Value of GKr, defaults to 0.0136
GKs : float, optional
Value of GKs, defaults to 0.0245
GNa : float, optional
Value of GNa, defaults to 12.8
PCa : float, optional
Value of PCa, defaults to 2.26e-05
class carputils.model.ionic.GrandiIonicModel(*args, **kwargs)

Describes the Grandi ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cai_init : float, optional
Value of Cai_init, defaults to 0.08597401
Cao : float, optional
Value of Cao, defaults to 1.8
cell_type : float, optional
Value of cell_type
Cli : float, optional
Value of Cli, defaults to 15.0
Clo : float, optional
Value of Clo, defaults to 150.0
flags : float, optional
Value of flags
Ki_init : float, optional
Value of Ki_init, defaults to 120.0
Ko : float, optional
Value of Ko, defaults to 5.4
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
Mgi : float, optional
Value of Mgi, defaults to 1.0
Nai_init : float, optional
Value of Nai_init, defaults to 9.06
Nao : float, optional
Value of Nao, defaults to 140.0
class carputils.model.ionic.GrandiPanditVoigtIonicModel(*args, **kwargs)

Describes the GrandiPanditVoigt ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
AF : float, optional
Value of AF, defaults to 0.0
factor_GCaL : float, optional
Value of factor_GCaL, defaults to 1.0
factor_GK1 : float, optional
Value of factor_GK1, defaults to 1.0
factor_J_SRCarel : float, optional
Value of factor_J_SRCarel, defaults to 1.0
factor_J_SRleak : float, optional
Value of factor_J_SRleak, defaults to 1.0
factor_Vmax_SRCaP : float, optional
Value of factor_Vmax_SRCaP, defaults to 1.0
ISO : float, optional
Value of ISO, defaults to 0.0
markov_IKs : float, optional
Value of markov_IKs, defaults to 0.0
RA : float, optional
Value of RA, defaults to 0.0
usefca : float, optional
Value of usefca, defaults to 0.0
class carputils.model.ionic.HodgkinHuxleyIonicModel(*args, **kwargs)

Describes the HodgkinHuxley ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
g_L : float, optional
Value of g_L, defaults to 0.3
GK : float, optional
Value of GK, defaults to 36.0
GNa : float, optional
Value of GNa, defaults to 120.0
class carputils.model.ionic.InadaIonicModel(*args, **kwargs)

Describes the Inada ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
cell_type : float, optional
Value of cell_type
Cm : float, optional
Value of Cm
E_b : float, optional
Value of E_b
E_CaL : float, optional
Value of E_CaL
flags : float, optional
Value of flags
Gb : float, optional
Value of Gb
GCaL : float, optional
Value of GCaL
Gf : float, optional
Value of Gf
GK1 : float, optional
Value of GK1
GKr : float, optional
Value of GKr
GNa : float, optional
Value of GNa
Gst : float, optional
Value of Gst
Gto : float, optional
Value of Gto
kNaCa : float, optional
Value of kNaCa
p_max : float, optional
Value of p_max
p_rel : float, optional
Value of p_rel
class carputils.model.ionic.IribeKohlIonicModel(*args, **kwargs)

Describes the IribeKohl ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Ki_init : float, optional
Value of Ki_init, defaults to 138.22
class carputils.model.ionic.KurataIonicModel(*args, **kwargs)

Describes the Kurata ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 0.0
B_max : float, optional
Value of B_max, defaults to 0.56
Cm : float, optional
Value of Cm, defaults to 32.0
GCaL : float, optional
Value of GCaL, defaults to 0.58
Gh : float, optional
Value of Gh, defaults to 0.357
GhK : float, optional
Value of GhK, defaults to 0.6167
GhNa : float, optional
Value of GhNa, defaults to 0.3833
GKACh_max : float, optional
Value of GKACh_max
GKr : float, optional
Value of GKr
GKs : float, optional
Value of GKs, defaults to 0.0259
GNa : float, optional
Value of GNa, defaults to 0.0
Gst : float, optional
Value of Gst, defaults to 0.015
Gsus : float, optional
Value of Gsus, defaults to 0.02
Gto : float, optional
Value of Gto, defaults to 0.18
class carputils.model.ionic.LoeweIonicModel(*args, **kwargs)

Describes the Loewe ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 0.0
ACh_block : float, optional
Value of ACh_block
ACh_on : float, optional
Value of ACh_on, defaults to 0.0
ACh_shift : float, optional
Value of ACh_shift
C : float, optional
Value of C, defaults to 57.0
Ca_intracellular_fluxes_b_up : float, optional
Value of Ca_intracellular_fluxes_b_up
Ca_intracellular_fluxes_tau_dif_Ca : float, optional
Value of Ca_intracellular_fluxes_tau_dif_Ca, defaults to 5.469e-05
Ca_intracellular_fluxes_tau_tr : float, optional
Value of Ca_intracellular_fluxes_tau_tr, defaults to 0.04
Cao : float, optional
Value of Cao, defaults to 1.8
CM_tot : float, optional
Value of CM_tot, defaults to 0.045
CQ_tot : float, optional
Value of CQ_tot, defaults to 10.0
delta_m : float, optional
Value of delta_m, defaults to 1e-05
EC50_SK : float, optional
Value of EC50_SK, defaults to 0.7
EC50_SR : float, optional
Value of EC50_SR, defaults to 0.45
F : float, optional
Value of F, defaults to 96485.3415
Gf_K : float, optional
Value of Gf_K, defaults to 0.0117
Gf_Na : float, optional
Value of Gf_Na, defaults to 0.00696
GKACh : float, optional
Value of GKACh, defaults to 0.00345
GKr : float, optional
Value of GKr
GKs : float, optional
Value of GKs
GKs_ : float, optional
Value of GKs_, defaults to 0.000863714
GKur : float, optional
Value of GKur, defaults to 7.062e-05
GNa : float, optional
Value of GNa, defaults to 0.0223
GNa_L : float, optional
Value of GNa_L, defaults to 0.0
GSK : float, optional
Value of GSK, defaults to 0.000165
Gto : float, optional
Value of Gto, defaults to 0.00167348
HSR : float, optional
Value of HSR, defaults to 2.5
ICaL_fCa_gate_alpha_fCa : float, optional
Value of ICaL_fCa_gate_alpha_fCa, defaults to 0.0075
IKACh_a_gate_alpha_a : float, optional
Value of IKACh_a_gate_alpha_a
INaK_max : float, optional
Value of INaK_max, defaults to 0.137171
Iso_1_uM : float, optional
Value of Iso_1_uM, defaults to 0.0
Iso_increase_1 : float, optional
Value of Iso_increase_1
Iso_increase_2 : float, optional
Value of Iso_increase_2
Iso_shift_1 : float, optional
Value of Iso_shift_1
Iso_shift_2 : float, optional
Value of Iso_shift_2
Iso_shift_dL : float, optional
Value of Iso_shift_dL
Iso_slope_dL : float, optional
Value of Iso_slope_dL
K1ni : float, optional
Value of K1ni, defaults to 395.3
K1no : float, optional
Value of K1no, defaults to 1628.0
K2ni : float, optional
Value of K2ni, defaults to 2.289
K2no : float, optional
Value of K2no, defaults to 561.4
k34 : float, optional
Value of k34
K3ni : float, optional
Value of K3ni, defaults to 26.44
K3no : float, optional
Value of K3no, defaults to 4.663
k_dL : float, optional
Value of k_dL, defaults to 5.854
k_fL : float, optional
Value of k_fL, defaults to 5.1737
K_NaCa : float, optional
Value of K_NaCa, defaults to 3.343
K_up : float, optional
Value of K_up, defaults to 0.000286113
kb_CM : float, optional
Value of kb_CM, defaults to 542.0
kb_CQ : float, optional
Value of kb_CQ, defaults to 445.0
kb_TC : float, optional
Value of kb_TC, defaults to 446.0
kb_TMC : float, optional
Value of kb_TMC, defaults to 7.51
kb_TMM : float, optional
Value of kb_TMM, defaults to 751.0
Kci : float, optional
Value of Kci, defaults to 0.0207
Kcni : float, optional
Value of Kcni, defaults to 26.44
Kco : float, optional
Value of Kco, defaults to 3.663
kf_CM : float, optional
Value of kf_CM, defaults to 1641986.0
kf_CQ : float, optional
Value of kf_CQ, defaults to 175.4
kf_TC : float, optional
Value of kf_TC, defaults to 88800.0
kf_TMC : float, optional
Value of kf_TMC, defaults to 227700.0
kf_TMM : float, optional
Value of kf_TMM, defaults to 2277.0
kiCa : float, optional
Value of kiCa, defaults to 500.0
kim : float, optional
Value of kim, defaults to 5.0
Km_fCa : float, optional
Value of Km_fCa, defaults to 0.000338
Km_Kp : float, optional
Value of Km_Kp, defaults to 1.4
Km_Nap : float, optional
Value of Km_Nap, defaults to 14.0
Ko : float, optional
Value of Ko, defaults to 5.4
koCa : float, optional
Value of koCa, defaults to 10000.0
kom : float, optional
Value of kom, defaults to 660.0
ks : float, optional
Value of ks, defaults to 148041085.1
L_cell : float, optional
Value of L_cell, defaults to 67.0
L_sub : float, optional
Value of L_sub, defaults to 0.02
MaxSR : float, optional
Value of MaxSR, defaults to 15.0
Mgi : float, optional
Value of Mgi, defaults to 2.5
MinSR : float, optional
Value of MinSR, defaults to 1.0
n_SK : float, optional
Value of n_SK, defaults to 2.2
Nao : float, optional
Value of Nao, defaults to 140.0
offset_fT : float, optional
Value of offset_fT, defaults to 0.0
P_CaL : float, optional
Value of P_CaL, defaults to 0.5046812
P_CaT : float, optional
Value of P_CaT, defaults to 0.04132
P_up : float, optional
Value of P_up
P_up_basal : float, optional
Value of P_up_basal, defaults to 5.0
Qci : float, optional
Value of Qci, defaults to 0.1369
Qco : float, optional
Value of Qco, defaults to 0.0
Qn : float, optional
Value of Qn, defaults to 0.4315
R_2 : float, optional
Value of R_2, defaults to 8314.472
R_cell : float, optional
Value of R_cell, defaults to 3.9
RTONF : float, optional
Value of RTONF
shift_fL : float, optional
Value of shift_fL, defaults to 0.0
slope_up : float, optional
Value of slope_up, defaults to 5e-05
T : float, optional
Value of T, defaults to 310.0
TC_tot : float, optional
Value of TC_tot, defaults to 0.031
TMC_tot : float, optional
Value of TMC_tot, defaults to 0.062
V_cell : float, optional
Value of V_cell
V_dL : float, optional
Value of V_dL, defaults to -7.7713
V_i : float, optional
Value of V_i
V_i_part : float, optional
Value of V_i_part, defaults to 0.46
V_jsr : float, optional
Value of V_jsr
V_jsr_part : float, optional
Value of V_jsr_part, defaults to 0.0012
V_nsr : float, optional
Value of V_nsr
V_nsr_part : float, optional
Value of V_nsr_part, defaults to 0.0116
V_sub : float, optional
Value of V_sub
y_shift : float, optional
Value of y_shift, defaults to 0.0
class carputils.model.ionic.LuoRudy91IonicModel(*args, **kwargs)

Describes the LuoRudy91 ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cai_init : float, optional
Value of Cai_init, defaults to 0.0002
Gb : float, optional
Value of Gb, defaults to 0.03921
GK1bar : float, optional
Value of GK1bar, defaults to 0.604
GKbar : float, optional
Value of GKbar, defaults to 0.282
GKp : float, optional
Value of GKp, defaults to 0.0183
GNa : float, optional
Value of GNa, defaults to 23.0
Gsi : float, optional
Value of Gsi, defaults to 0.09
Ki : float, optional
Value of Ki, defaults to 145.0
Ko : float, optional
Value of Ko, defaults to 5.4
Nai : float, optional
Value of Nai, defaults to 18.0
Nao : float, optional
Value of Nao, defaults to 140.0
tau_d_factor : float, optional
Value of tau_d_factor, defaults to 1.0
tau_f_factor : float, optional
Value of tau_f_factor, defaults to 1.0
class carputils.model.ionic.LuoRudy94IonicModel(*args, **kwargs)

Describes the LuoRudy94 ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
GNaK : float, optional
Value of GNaK, defaults to 1.0
class carputils.model.ionic.MacCannellIonicModel(*args, **kwargs)

Describes the MacCannell ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
GbNa : float, optional
Value of GbNa, defaults to 0.0095
GK1 : float, optional
Value of GK1, defaults to 0.4822
GKv : float, optional
Value of GKv, defaults to 0.25
Ki_init : float, optional
Value of Ki_init, defaults to 140.045865
Ko : float, optional
Value of Ko, defaults to 5.4
maxINaK : float, optional
Value of maxINaK, defaults to 1.4
Nai_init : float, optional
Value of Nai_init, defaults to 9.954213
Nao : float, optional
Value of Nao, defaults to 130.0
class carputils.model.ionic.MahajanShiferawIonicModel(*args, **kwargs)

Describes the MahajanShiferaw ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
BASE_Ki : float, optional
Value of BASE_Ki, defaults to 140.0
Cao : float, optional
Value of Cao
constant_Ki : float, optional
Value of constant_Ki, defaults to 0.0
factorGKs : float, optional
Value of factorGKs
GCaL : float, optional
Value of GCaL, defaults to 182.0
GK1 : float, optional
Value of GK1, defaults to 0.3
GKr : float, optional
Value of GKr, defaults to 0.0125
GKs : float, optional
Value of GKs, defaults to 0.32
GNa : float, optional
Value of GNa, defaults to 12.0
GNaCa : float, optional
Value of GNaCa, defaults to 0.84
gss : float, optional
Value of gss
Gtof : float, optional
Value of Gtof, defaults to 0.11
Gtos : float, optional
Value of Gtos, defaults to 0.04
Ko : float, optional
Value of Ko
Nai : float, optional
Value of Nai
Nao : float, optional
Value of Nao
T : float, optional
Value of T, defaults to 308.0
class carputils.model.ionic.MaleckarIonicModel(*args, **kwargs)

Describes the Maleckar ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
type : float, optional
Value of type, defaults to 1.0
class carputils.model.ionic.MitchellSchaefferIonicModel(*args, **kwargs)

Describes the MitchellSchaeffer ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
a_crit : float, optional
Value of a_crit, defaults to 0.0
tau_close : float, optional
Value of tau_close, defaults to 150.0
tau_in : float, optional
Value of tau_in, defaults to 0.3
tau_open : float, optional
Value of tau_open, defaults to 120.0
tau_out : float, optional
Value of tau_out, defaults to 5.0
V_gate : float, optional
Value of V_gate, defaults to 0.13
V_max : float, optional
Value of V_max, defaults to 1.0
V_min : float, optional
Value of V_min, defaults to 0.0
class carputils.model.ionic.NygrenIonicModel(*args, **kwargs)

Describes the Nygren ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
GCaB : float, optional
Value of GCaB, defaults to 0.00157362
GCaL : float, optional
Value of GCaL, defaults to 0.135
GK1 : float, optional
Value of GK1, defaults to 0.06
GKr : float, optional
Value of GKr, defaults to 0.01
GKS : float, optional
Value of GKS, defaults to 0.02
GNaB : float, optional
Value of GNaB, defaults to 0.00121198
Gsus : float, optional
Value of Gsus, defaults to 0.055
Gt : float, optional
Value of Gt, defaults to 0.15
KNaCa : float, optional
Value of KNaCa, defaults to 0.000749684
maxINaK : float, optional
Value of maxINaK, defaults to 1.416506
class carputils.model.ionic.OHaraIonicModel(*args, **kwargs)

Describes the OHara ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 1.8
celltype : float, optional
Value of celltype
factorIbCa : float, optional
Value of factorIbCa, defaults to 1.0
factorIbNa : float, optional
Value of factorIbNa, defaults to 1.0
factorICaK : float, optional
Value of factorICaK, defaults to 1.0
factorICaL : float, optional
Value of factorICaL, defaults to 1.0
factorICaNa : float, optional
Value of factorICaNa, defaults to 1.0
factorINaCa : float, optional
Value of factorINaCa, defaults to 1.0
factorINaCass : float, optional
Value of factorINaCass, defaults to 1.0
factorINaK : float, optional
Value of factorINaK, defaults to 1.0
flags : float, optional
Value of flags
GK1 : float, optional
Value of GK1
GKb : float, optional
Value of GKb
GKr : float, optional
Value of GKr
GKs : float, optional
Value of GKs
GNa : float, optional
Value of GNa
GNaCa : float, optional
Value of GNaCa
GNaL : float, optional
Value of GNaL
GpCa : float, optional
Value of GpCa, defaults to 0.0005
Gto : float, optional
Value of Gto
INa_Type : float, optional
Value of INa_Type
jrel_stiff_const : float, optional
Value of jrel_stiff_const, defaults to 0.005
Ko : float, optional
Value of Ko, defaults to 5.4
Nao : float, optional
Value of Nao, defaults to 140.0
scale_tau_m : float, optional
Value of scale_tau_m, defaults to 0.3
shift_m_inf : float, optional
Value of shift_m_inf, defaults to -8.0
vHalfXs : float, optional
Value of vHalfXs, defaults to 11.6
class carputils.model.ionic.PassiveIonicRegion(*args, **kwargs)

Describes the passive ionic model configuration

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
class carputils.model.ionic.PathmanathanIonicModel(*args, **kwargs)

Describes the Pathmanathan ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
beta : float, optional
Value of beta, defaults to 1.0
Cm : float, optional
Value of Cm, defaults to 200.0
xi : float, optional
Value of xi, defaults to 3.0
class carputils.model.ionic.PlonseyIonicModel(*args, **kwargs)

Describes the Plonsey ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Rm : float, optional
Value of Rm, defaults to 10.0
Vrest : float, optional
Value of Vrest, defaults to 0.0
class carputils.model.ionic.RamirezIonicModel(*args, **kwargs)

Describes the Ramirez ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 1.8
Clo : float, optional
Value of Clo, defaults to 132.0
GbCa : float, optional
Value of GbCa, defaults to 0.00113
GbNa : float, optional
Value of GbNa, defaults to 0.000674
GCaL : float, optional
Value of GCaL, defaults to 0.24
GClCa : float, optional
Value of GClCa, defaults to 0.3
GK1 : float, optional
Value of GK1, defaults to 0.15
GKr : float, optional
Value of GKr, defaults to 0.06984
GKs : float, optional
Value of GKs, defaults to 0.0561
GNa : float, optional
Value of GNa, defaults to 7.8
Gto : float, optional
Value of Gto, defaults to 0.19824
Ko : float, optional
Value of Ko, defaults to 5.4
maxCa_up : float, optional
Value of maxCa_up, defaults to 15.0
maxINaCa : float, optional
Value of maxINaCa, defaults to 1600.0
maxINaK : float, optional
Value of maxINaK, defaults to 0.6
maxIpCa : float, optional
Value of maxIpCa, defaults to 0.275
maxIup : float, optional
Value of maxIup, defaults to 0.005
Nao : float, optional
Value of Nao, defaults to 140.0
tau_tr : float, optional
Value of tau_tr, defaults to 180.0
tau_u : float, optional
Value of tau_u, defaults to 8.0
class carputils.model.ionic.ShannonIonicModel(*args, **kwargs)

Describes the Shannon ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
class carputils.model.ionic.SkibsbyeIonicModel(*args, **kwargs)

Describes the Skibsbye ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 0.0
cAF_cpumps : float, optional
Value of cAF_cpumps, defaults to 1.0
cAF_gCaL : float, optional
Value of cAF_gCaL, defaults to 1.0
cAF_gK1 : float, optional
Value of cAF_gK1, defaults to 1.0
cAF_gKCa : float, optional
Value of cAF_gKCa, defaults to 1.0
cAF_gKs : float, optional
Value of cAF_gKs, defaults to 1.0
cAF_gNa : float, optional
Value of cAF_gNa, defaults to 1.0
cAF_gsus : float, optional
Value of cAF_gsus, defaults to 1.0
cAF_gt : float, optional
Value of cAF_gt, defaults to 1.0
cAF_kNaCa : float, optional
Value of cAF_kNaCa, defaults to 1.0
cAF_lcell : float, optional
Value of cAF_lcell, defaults to 1.0
cAF_phos : float, optional
Value of cAF_phos, defaults to 1.0
cAF_PLB : float, optional
Value of cAF_PLB, defaults to 1.0
cAF_RyR : float, optional
Value of cAF_RyR, defaults to 1.0
cAF_SLN : float, optional
Value of cAF_SLN, defaults to 1.0
factorgcal : float, optional
Value of factorgcal, defaults to 1.0
factorgk1 : float, optional
Value of factorgk1, defaults to 1.0
factorgkr : float, optional
Value of factorgkr, defaults to 1.0
factorgks : float, optional
Value of factorgks, defaults to 1.0
factorgto : float, optional
Value of factorgto, defaults to 1.0
class carputils.model.ionic.StewardIonicModel(*args, **kwargs)

Describes the Steward ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Gbca : float, optional
Value of Gbca, defaults to 0.000592
Gbna : float, optional
Value of Gbna, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 3.98e-05
Gf_K : float, optional
Value of Gf_K, defaults to 0.0234346
Gf_Na : float, optional
Value of Gf_Na, defaults to 0.0145654
GK1 : float, optional
Value of GK1, defaults to 0.065
GKr : float, optional
Value of GKr, defaults to 0.0918
GKs : float, optional
Value of GKs, defaults to 0.2352
GNa : float, optional
Value of GNa, defaults to 130.5744
GpCa : float, optional
Value of GpCa, defaults to 0.1238
GpK : float, optional
Value of GpK, defaults to 0.0146
Gsus : float, optional
Value of Gsus, defaults to 0.0227
Gto : float, optional
Value of Gto, defaults to 0.08184
maxINaCa : float, optional
Value of maxINaCa, defaults to 1000.0
maxINaK : float, optional
Value of maxINaK, defaults to 2.724
class carputils.model.ionic.TomekIonicModel(*args, **kwargs)

Describes the Tomek ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
celltype : float, optional
Value of celltype
flags : float, optional
Value of flags
class carputils.model.ionic.WangSobieIonicModel(*args, **kwargs)

Describes the WangSobie ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Cai_init : float, optional
Value of Cai_init, defaults to 0.2049
ICaL_slowdown : float, optional
Value of ICaL_slowdown, defaults to 1.0
Ki_init : float, optional
Value of Ki_init, defaults to 136450.0
Nai_init : float, optional
Value of Nai_init, defaults to 21747.0
carputils.model.ionic.get(*args, **kwargs)

Get a class from its key string from keys()

carputils.model.ionic.keys()

Return a list of string keys to be used with get()

carputils.model.ionic.summary(indent=2, ncolumns=4, padding=2)

Return a string summarizing the models and their parameters

class carputils.model.ionic.tenTusscherPanfilovIonicModel(*args, **kwargs)

Describes the tenTusscherPanfilov ionic model

IDs : list of int
The material tags to be included in this IMP region
name : str
The name of the model material region
Bufc : float, optional
Value of Bufc, defaults to 0.2
Bufsr : float, optional
Value of Bufsr, defaults to 10.0
Bufss : float, optional
Value of Bufss, defaults to 0.4
Cao : float, optional
Value of Cao, defaults to 2.0
CAPACITANCE : float, optional
Value of CAPACITANCE, defaults to 0.185
cell_type : float, optional
Value of cell_type
D_CaL_off : float, optional
Value of D_CaL_off, defaults to 0.0
Fconst : float, optional
Value of Fconst, defaults to 96485.3415
flags : float, optional
Value of flags
GbCa : float, optional
Value of GbCa, defaults to 0.000592
GbNa : float, optional
Value of GbNa, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 3.98e-05
GK1 : float, optional
Value of GK1, defaults to 5.405
GKr : float, optional
Value of GKr, defaults to 0.153
GKs : float, optional
Value of GKs
GNa : float, optional
Value of GNa, defaults to 14.838
GpCa : float, optional
Value of GpCa, defaults to 0.1238
GpK : float, optional
Value of GpK, defaults to 0.0146
Gto : float, optional
Value of Gto
Kbufc : float, optional
Value of Kbufc, defaults to 0.001
Kbufsr : float, optional
Value of Kbufsr, defaults to 0.3
Kbufss : float, optional
Value of Kbufss, defaults to 0.00025
KmCa : float, optional
Value of KmCa, defaults to 1.38
KmK : float, optional
Value of KmK, defaults to 1.0
KmNa : float, optional
Value of KmNa, defaults to 40.0
KmNai : float, optional
Value of KmNai, defaults to 87.5
knaca : float, optional
Value of knaca, defaults to 1000.0
knak : float, optional
Value of knak, defaults to 2.724
Ko : float, optional
Value of Ko, defaults to 5.4
KpCa : float, optional
Value of KpCa, defaults to 0.0005
ksat : float, optional
Value of ksat, defaults to 0.1
Kup : float, optional
Value of Kup, defaults to 0.00025
n : float, optional
Value of n, defaults to 0.35
Nao : float, optional
Value of Nao, defaults to 140.0
pKNa : float, optional
Value of pKNa, defaults to 0.03
Rconst : float, optional
Value of Rconst, defaults to 8314.472
scl_tau_f : float, optional
Value of scl_tau_f, defaults to 1.0
T : float, optional
Value of T, defaults to 310.0
Vc : float, optional
Value of Vc, defaults to 0.016404
vHalfXs : float, optional
Value of vHalfXs, defaults to 5.0
Vleak : float, optional
Value of Vleak, defaults to 0.00036
Vmaxup : float, optional
Value of Vmaxup, defaults to 0.006375
Vrel : float, optional
Value of Vrel, defaults to 0.102
Vsr : float, optional
Value of Vsr, defaults to 0.001094
Vss : float, optional
Value of Vss, defaults to 5.468e-05
xr2_off : float, optional
Value of xr2_off, defaults to 0.0