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CARPentry Modeling Environment Documentation Index
CARPentry Modeling Environment Documentation Index
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CME - Overview
CME - Installation
Flavor
Operating systems
Status of Availability
Installing the Linux version
Installing the Mac OSX verison
CME - Manual
Modeling Cardiac Function
Forward modeling
Model Parameterization and Initialization
CME Components
Preprocessing
Segmentation and Classification
Meshing
Multiphysics Mesh Aspects
Region definition
Using CARPentry
Getting Help
Basic experiment definition
Picking a model and discretization scheme
Picking a solver
Configuring IO
Cardiac Electrophysiology Modeling
Single Cell Scale - Ionic Models
Hodgkin-Huxley Dynamics
Markov Models
Single Cell modeling tool bench
Read the default command line output
Code Generation
Tissue Scale
Model Equations
Electrical Stimulation
Electrical Tissue Properties
Electrical Mapping
Cardiac Mechanics Modeling
Single Cell Scale
Activation-based coupling with phenomenological myofilament models
Calcium-based weak coupling with biophysical active stress models
Calcium-based weak coupling with biophysical active stress models
Excitation-Contraction Coupling (ECC)
Mechano-electric Feedback (MEF)
Tissue Scale
Passive Material Models
Holzapfel and Ogden (2009) myocardial model
Guccione et al. myocardial model
Mechanical Boundary Conditions
Cardiovascular Hemodynamics Modeling
Post-processing
Electrocardiogram
Optical Mapping
Boundary Conditions
Pre- and post-processing tools
Mesh generation (mesher)
Introduction
Usage
Example
Tag regions
Mesh processing (meshtool)
Mesh data extraction
Meshtool query function
Mesh quality improvement
igbutils
igbhead
igbapd
igbops
igbextract
igbdft
FEM tools
GlElemCenters
GlFilament
GlGradient
GlInterpolate
GlRuleFibers
GlTransfer
Visualization tools
Meshalyzer
Purpose
Installation
Input Files
Appendix
File formats
Input file formats
CARPentry Literature